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Genome Reports from the Biodiversity Genomics Europe Project

Genome Reports from the Biodiversity Genomics Europe Project

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Home Collections Genome Reports from the Biodiversity Genomics Europe Project
1-20 of 21 ARTICLES
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https://doi.org/10.12688/openreseurope.22136.1
Data Note metrics AWAITING PEER REVIEW
ERGA-BGE Genome of Ailoscolex lacteospumosus Bouché, 1969 – the enigmatic milky worm endemic to the Pyrenees
[version 1; peer review: awaiting peer review]
Marta Novo, Daniel Fernández Marchán, Sylvain Gérard, Alejandro Martínez Navarro, Rita Monteiro, Astrid Böhne, Thomas Marcussen, Torsten H Struck, Rebekah A Oomen, Laura Aguilera, Marta Gut, Francisco Câmara Ferreira, Jèssica Gómez-Garrido, Fernando Cruz, Tyler Alioto, Anna Lazar, Leanne Haggerty, Fergal Martin, Tom Brown
Peer Reviewers Invited
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
  • MCIN/AEI/10.13039/501100011033/FEDER, UE
PUBLISHED 26 Jan 2026
https://doi.org/10.12688/openreseurope.22093.1
Data Note metrics AWAITING PEER REVIEW
ERGA-BGE genome of Albinaria teres (Olivier, 1801): a rock-dwelling land snail endemic to the island of Crete, Greece
[version 1; peer review: awaiting peer review]
Danae Karakasi, Katerina Vardinoyannis, Giannis Bolanakis, Eleftherios Bitzilekis, Manos Stratakis, Petros Lymberakis, Nikolaos Poulakakis, Rita Monteiro, Astrid Böhne, Rosa Fernández, Nuria Escudero, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Adama N’dar, Francesca Floriana Tricomi, Leanne Haggerty, Fergal Martin, Patrick Wincker, Pedro H Oliveira, Jean-Marc Aury, Tom Brown
Peer Reviewers Invited
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
  • Genoscope, the Commissariat à l'Energie Atomique et aux Énergies Alternatives (CEA), France Génomique
  • ATLASea: Atlas of marine genomes
PUBLISHED 26 Jan 2026
https://doi.org/10.12688/openreseurope.20489.3
Data Note metrics
Revised
ERGA-BGE genome of Dendarus foraminosus: an IUCN Least Concern darkling beetle endemic to Crete (Greece)
[version 3; peer review: 4 approved]
Giannis Bolanakis, Danae Karakasi, Apostolos Trichas, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Eleftherios Bitzilekis, Manos Stratakis, Petros Lymberakis, Nikolaos Poulakakis, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Simone Duprat, Emilie Téodori, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Leanne Haggerty, Swati Sinha, Fergal Martin, Chiara Bortoluzzi
Peer Reviewers Terrence Sylvester; Valentina Peona; Arun Arumugaperumal; Christopher B Cunningham
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
  • Agence Nationale de Recherche
LATEST VERSION PUBLISHED 15 Jan 2026
https://doi.org/10.12688/openreseurope.20717.1
Data Note metrics AWAITING PEER REVIEW
ERGA-BGE genome of Erebia palarica Chapman, 1905: a montane butterfly endemic to North-West Spain
[version 1; peer review: awaiting peer review]
Marta Vila, Laura Torrado-Blanco, Nils Ryrholm, David Romero-Pedreira, María Conejero, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Rebekah A. Oomen, Torsten H. Struck, Laura Aguilera, Marta Gut, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Leanne Haggerty, Fergal Martin, Chiara Bortoluzzi
Peer Reviewers Invited
  • Funders
  • UK Research and Innovation (UKRI)
  • Xunta de Galicia
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
PUBLISHED 06 Jan 2026
https://doi.org/10.12688/openreseurope.21672.1
Data Note metrics
ERGA-BGE reference genome of Hirudo verbana, a once neglected freshwater haematophagous European medicinal leech
[version 1; peer review: 2 approved]
Alejandro Manzano-Marín, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Torsten H. Struck, Rebekah A. Oomen, Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory Team, Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Wellcome Sanger Institute Tree of Life Core Informatics Team, Caroline Howard, Kerstin Howe, Mark Blaxter, Shane McCarthy, Jonathan M.D. Wood, Fergal Martin, Anna Lazar, Leanne Haggerty, Chiara Bortoluzzi
Peer Reviewers Naim Saglam; Christian Mueller
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
  • 840270
PUBLISHED 22 Dec 2025
https://doi.org/10.12688/openreseurope.21922.1
Data Note metrics
ERGA-BGE genome of Androsace saussurei Dentant, Lavergne, F. C. Boucher & S. Ibanez, a recently described plant from the rooftops of Europe
[version 1; peer review: 1 approved, 1 approved with reservations]
Sébastien Lavergne, Zoé Rosa, Chuan Peng, Rita Monteiro, Astrid Böhne, Thomas Marcussen, Torsten H. Struck, Rebekah A Oomen, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Emilie Téodori, Lola Demirdjian, Patrick Wincker, Pedro H Oliveira, Jean-Marc Aury, Vianey Paola Barrera Enriquez, Leanne Haggerty, Fergal Martin, Tom Brown
Peer Reviewers Francesco Garassino; Cheng-Yuan Zhou
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation
  • Horizon Europe Framework Programme
  • ATLASea: Atlas of marine genomes
  • LABEX OSUG@2020
  • Genoscope
  • Commissariat à l'Énergie Atomique et aux Énergies Alternatives (CEA), France Génomique
PUBLISHED 27 Nov 2025
https://doi.org/10.12688/openreseurope.21891.1
Data Note metrics
ERGA-BGE genome of Xanthium orientale subsp. italicum (Moretti) Greuter. A plant of American origin, now widespread and, in some cases, invasive in Europe
[version 1; peer review: 2 approved with reservations]
Salvatore Tomasello, Eleonora Manzo, Rita Monteiro, Astrid Böhne, Thomas Marcussen, Torsten H Struck, Rebekah A Oomen, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Adama N’dar, Patrick Wincker, Pedro H Oliveira, Jean-Marc Aury, Vianey Paola Barrera Enriquez, Leanne Haggerty, Fergal Martin, Tom Brown
Peer Reviewers Nunzio D'Agostino; Marcial Escudero, Rogelio Sánchez-Villegas and Inés Gómez-Ramos
  • Funders
  • UK Research and Innovation (UKRI)
  • Deutsche Forschungsgemeinschaft (DFG)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
  • ATLASea: Atlas of marine genomes
  • Commissariat à l'Energie Atomique et aux Énergies Alternatives (CEA), France Génomique
PUBLISHED 27 Nov 2025
https://doi.org/10.12688/openreseurope.21671.1
Data Note metrics
ERGA-BGE reference genome of Leviellus thorelli, a common orb-weaving spider representing the Zygiellidae family
[version 1; peer review: 1 approved]
Matjaz Gregorič, Elena Bužan, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Chiara Bortoluzzi
Peer Reviewers Zhisheng Zhang
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
  • Slovenian Research and Innovation Agency
PUBLISHED 27 Nov 2025
https://doi.org/10.12688/openreseurope.21501.2
Data Note metrics
Update
ERGA-BGE reference genome of the lineid heteronemertean Lineus lacteus (Pilidiophora, Nemertea)
[version 2; peer review: 2 approved]
Aida Verdes, Patricia Alvarez-Campos, María Conejero, Ana Riesgo, Astrid Böhne, Rita Monteiro, Javier Palma-Guerrero, Rosa Fernández, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Chiara Bortoluzzi
Peer Reviewers Thomas D Lewin; Natsumi Hookabe
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
  • “La Caixa” Banking Foundation
  • European Union “Next Generation EU”/PRTR
LATEST VERSION PUBLISHED 25 Nov 2025
https://doi.org/10.12688/openreseurope.21670.1
Data Note metrics
ERGA-BGE reference genome of Lewinskya acuminata, a common epiphytic Mediterranean moss with disjunct populations in California and Ethiopia
[version 1; peer review: 1 approved, 1 approved with reservations]
Pablo Aguado-Ramsay, Francisco Lara, Isabel Draper, Maria Conejero, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Torsten H. Struck, Rebekah A. Oomen, Genomescope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Emilie Téodori, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Chiara Bortoluzzi
Peer Reviewers Qilin Yang; Panagiotis Ioannidis
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Autonomous Community of Madrid
  • Horizon Europe Framework Programme
  • Spanish Research Agency of the Ministry of Science and Innovation
  • Agence nationale de la recherche (ANR)
PUBLISHED 24 Nov 2025
https://doi.org/10.12688/openreseurope.21608.1
Data Note metrics
ERGA-BGE genome of Patella rustica Linnaeus, 1758: a resource to investigate responses to global warming in the intertidal
[version 1; peer review: 1 approved, 1 approved with reservations]
Rui Faria, Rocío Nieto Vilela, Fernando P Lima, Rita Monteiro, Astrid Böhne, Thomas Marcussen, Torsten H Struck, Rebekah A Oomen, Marta Gut, Laura Aguilera, Tyler Alioto, Francisco Câmara Ferreira, Jèssica Gómez-Garrido, Fernando Cruz, Anna Lazar, Leanne Haggerty, Fergal Martin, Tom Brown
Peer Reviewers Jacob A Tennessen; Yasuto ISHII
  • Funders
  • Fundação para a Ciência e a Tecnologia
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
  • UK Research and Innovation
PUBLISHED 11 Nov 2025
https://doi.org/10.12688/openreseurope.20937.2
Data Note metrics
Revised
ERGA-BGE reference genome of Hanak's bat (Pipistrellus hanaki), an IUCN Vulnerable species restricted to forest-like biotopes
[version 2; peer review: 2 approved]
Panagiotis Georgakakis, Danae Karakasi, Petros Lymberakis, Manolis Papadimitrakis, Manos Stratakis, Eleftherios Bitzilekis, Nikolaos Poulakakis, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Sophie Mangenot, Caroline Belser, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Leanne Haggerty, Swati Sinha, Fergal Martin, Chiara Bortoluzzi
Peer Reviewers Richard Orton; Jiang Feng
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Agence Nationale de la Recherche
  • Horizon Europe Framework Programme
LATEST VERSION PUBLISHED 11 Nov 2025
https://doi.org/10.12688/openreseurope.21514.1
Data Note metrics
ERGA-BGE reference genome of Eunicella cavolini, an IUCN Near Threatened Gorgonian of the Mediterranean Sea
[version 1; peer review: 2 approved]
Didier Aurelle, Dorian Guillemain, Frédéric Zuberer, Denys Malengros, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Torsten H. Struck, Rebekah A. Oomen, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Caroline Belser, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Chiara Bortoluzzi
Peer Reviewers Benjamin D. Young; Alan Elena
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Agence Nationale de la Recherche
  • Horizon Europe Framework Programme
  • European FEDER Fund
  • Excellence Initiative of Aix-Marseille University
PUBLISHED 22 Oct 2025
https://doi.org/10.12688/openreseurope.20841.1
Data Note metrics
ERGA-BGE reference genome of Holothuria (Platyperona) sanctori: a sea cucumber from the Mediterranean Sea
[version 1; peer review: 2 approved]
Katerina Vasileiadou, Thanos Dailianis, Grigorios Skouradakis, Emmanouela Vernadou, Danae Karakasi, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Tereza Manousaki, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Adama Ndar, Patrick Wincker, Pedro H Oliveira, Jean-Marc Aury, Chiara Bortoluzzi
Peer Reviewers Poppy Hesketh-Best; Estelle Proux-Wéra
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
  • Agence nationale de la recherche
PUBLISHED 25 Sep 2025
https://doi.org/10.12688/openreseurope.20658.2
Data Note metrics
Revised
ERGA-BGE genome of the Spanish moon moth Actias isabellae Graells, 1849: a nocturnal lepidopteran protected by the Habitats Directive
[version 2; peer review: 2 approved]
Marta Vila, Neus Marí-Mena, Roger Vila, Ana Riesgo, Daniel García-Souto, Carlos Lopez-Vaamonde, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Rebekah Oomen, Torsten H. Struck, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Leanne Haggerty, Fergal Martin, Chiara Bortoluzzi
Peer Reviewers Jiufeng Wei; Dimitar Dimitrov
  • Funders
  • Generalitat de Catalunya
  • UK Research and Innovation (UKRI)
  • Xunta de Galicia
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Ministerio de Ciencia, Innovación y Universidades & Agencia Estatal de Investigación
  • Horizon Europe Framework Programme
  • University of A Coruña
LATEST VERSION PUBLISHED 16 Sep 2025
https://doi.org/10.12688/openreseurope.20439.1
Data Note metrics
ERGA-BGE genome of Stigmatoteuthis arcturi Robson, 1948: the jewelled squid
[version 1; peer review: 2 approved, 1 approved with reservations]
Fernando Ángel Fernández-Álvarez, Ainhoa Bernal-Bajo, Nuria Escudero, María Conejero, Ana Riesgo, Rosa Fernández, Rita Monteiro, Astrid Böhne, Laura Aguilera, Marta Gut, Tyler S Alioto, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Leanne Haggerty, Fergal Martin, Tom Brown
Peer Reviewers Masa-Aki Yoshida; José M Martín-Durán; Marco Gerdol
  • Funders
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
  • Spanish Ministry of Science, Innovation and Universities
  • Spanish government
  • UK Research and Innovation
  • Secretaria d ́Universitats i Recerca del Departament de Recerca i Universitats of the Generalitat de Catalunya
PUBLISHED 04 Sep 2025
https://doi.org/10.12688/openreseurope.20840.1
Data Note metrics
ERGA-BGE genome of Dailognatha quadricollis, an East Mediterranean darkling beetle
[version 1; peer review: 1 approved, 1 approved with reservations]
Giannis Bolanakis, Danae Karakasi, Eleftherios Bitzilekis, Manos Stratakis, Apostolos Trichas, Petros Lymberakis, Nikos Poulakakis, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Emilie Téodori, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Chiara Bortoluzzi
Peer Reviewers Arun Arumugaperumal; Yingao Cai and Fengling Huang
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Agence Nationale de la Recherche
  • Horizon Europe Framework Programme
PUBLISHED 06 Aug 2025
https://doi.org/10.12688/openreseurope.20864.1
Data Note metrics
ERGA-BGE genome of the ironclad beetle Tarphius canariensis Wollaston, 1862
[version 1; peer review: 1 approved, 1 approved with reservations]
Brent C Emerson, María Conejero, Ana Riesgo, Víctor Noguerales, Rita Monteiro, Astrid Böhne, Javier Palma Guerrero, Rosa Fernández, Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory team, Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Wellcome Sanger Institute Tree of Life Core Informatics team, Leanne Haggerty, Fergal Martin, Tom Brown
Peer Reviewers Merly Escalona; Valentina Peona
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
PUBLISHED 05 Aug 2025
https://doi.org/10.12688/openreseurope.20863.1
Data Note metrics
ERGA-BGE Genome of the viperine water snake (Natrix maura): a key species for evolutionary insights of freshwater snakes
[version 1; peer review: 2 approved]
Salvador Carranza, Daniel Fernández-Guiberteau, Laura Blasón, Sergi Tulloch, Rita Monteiro, Astrid Böhne, Rosa Fernández, Nuria Escudero, Laura Aguilera, Marta Gut, Tyler S Alioto, Francisco Câmara Ferreira, Jèssica Gómez-Garrido, Fernando Cruz, Swati Sinha, Leanne Haggerty, Fergal Martin, Tom Brown
Peer Reviewers Yannis Schoneberg; Zexian Zhu
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • European Social Fund Plus
  • Horizon Europe Framework Programme
  • Department of Research and Universities of the Government of Catalonia
PUBLISHED 04 Aug 2025
https://doi.org/10.12688/openreseurope.20666.1
Data Note metrics
ERGA-BGE reference genome of the Azores Bullfinch - Pyrrhula murina Godman, 1866: an IUCN Vulnerable Species endemic to a single island in the Azores Archipelago (Portugal)
[version 1; peer review: 2 approved with reservations]
Ricardo Jorge Lopes, Astrid Böhne, Thomas Marcussen, Rebekah A. Oomen, Torsten Hugo Struck, Laura Aguilera, Marta Gut, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Rita Monteiro
Peer Reviewers Luke W Silver; Annabel Whibley
  • Funders
  • UID/00329/2025 | FCT Fundação para a Ciência e Tecnologia - Centre for Ecology, Evolution and Environmental Changes (CE3C)
  • Horizon Europe Framework Programme
  • UK Research and Innovation
  • 22.00173, 24.00054 | Swiss State Secretariat for Education, Research and Innovation (SERI)
PUBLISHED 01 Aug 2025
1-20 of 21 ARTICLES
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