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Genome Reports from the Biodiversity Genomics Europe Project

Genome Reports from the Biodiversity Genomics Europe Project

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Home Collections Genome Reports from the Biodiversity Genomics Europe Project
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https://doi.org/10.12688/openreseurope.25414.1
Data Note metrics AWAITING PEER REVIEW
ERGA-BGE reference genome of the bladderpod Alyssoides utriculata (L.) Medik. (Brassicaceae), a yellow-flowering shrub native to Switzerland
[version 1; peer review: awaiting peer review]
Christian de Guttry, Adrien Favre, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Rebekah A. Oomen, Torsten H. Struck, Chiara Natali, Chiara Vergata, Maria Angela Diroma, Claudio Ciofi, Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory Team, Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Caroline Howard, Mark Blaxter, Marcella Sozzoni, Tom Brown, Robert M. Waterhouse, Chiara Bortoluzzi
Peer Reviewers Invited
  • Funders
  • UK Research and Innovation (UKRI)
  • Horizon Europe Framework Programme
  • 22.00173, 24.00054
PUBLISHED 15 Oct 2026
https://doi.org/10.12688/openreseurope.24453.1
Data Note metrics AWAITING PEER REVIEW
ERGA-BGE genome of Gesiella jameensis (Hartmann-Schröder, 1974), an unpigmented blind anchialine cave annelid with deep-sea phylogenetic affinities
[version 1; peer review: awaiting peer review]
Alejandro Martínez, Nuria Escudero, Klara Eleftheriadi, Alvaro Roldan, Javier Palma Guerrero, Rita Monteiro, Astrid Boehne, Laura Aguilera, Marta Gut, Tyler Alioto, Francisco Camara Ferreira, Fernando Cruz, Jessica Gomez Garrido, Leopoldo Moro, Rosa Fernández
Peer Reviewers Invited
  • Funders
  • Spanish State Research Agency
  • Horizon Europe Framework Programme
  • Horizon 2020 Framework Programme
PUBLISHED 12 Oct 2026
https://doi.org/10.12688/openreseurope.23759.1
Data Note metrics AWAITING PEER REVIEW
ERGA-BGE genome of Valencia hispanica (Valenciennes, 1826): a critically endangered Iberian toothcarp
[version 1; peer review: awaiting peer review]
Marc Ventura, Nati Franch, Rosa Fernández, Javier Palma-Guerrero, Astrid Astrid Böhne, Rita Monteiro, Laura Aguilera, Marta Gut, Tyler S. Alioto, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Leanne Haggerty, Fergal Martin, Thomas Brown
Peer Reviewers Invited
  • Funders
  • Swiss State Secretariat for Education, Research and Innovation (SERI) under contract numbers 22.00173 and 24.00054
  • UK Research and Innovation (UKRI) under the Department for Business, Energy and Industrial Strategy’s Horizon Europe Guarantee Scheme
  • Horizon Europe Framework Programme
  • Fundación Biodiversidad (Spanish Government)
  • European Commission
  • Catalan Water Agency
  • Fundació Andrena
PUBLISHED 09 Oct 2026
https://doi.org/10.12688/openreseurope.25011.1
Data Note metrics AWAITING PEER REVIEW
ERGA-BGE reference genome of the European bladdernut (Staphylea pinnata)
[version 1; peer review: awaiting peer review]
Christian de Guttry, Roman A. Volkov, Kai-hsiu Chen, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Torsten H. Struck, Rebekah A Oomen, Genoscope Sequencing Team, Karine Ladabie, Lola Demirdjian, Adama N'dar, Pedro H. Oliveira, Patrick Wincker, Jean-Marc Aury, Fergal Martin, Vianey Paola Barrera Enriquez, Leanne Haggerty, Robert M. Waterhouse, Chiara Bortoluzzi
Peer Reviewers Invited
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Agence Nationale de la Recherche
  • Horizon Europe Framework Programme
PUBLISHED 06 Oct 2026
https://doi.org/10.12688/openreseurope.24522.1
Data Note metrics AWAITING PEER REVIEW
ERGA-BGE reference genome of Placobdella costata: an ectoparasitic glossiphoniid leech of freshwater turtles with a Palearctic distribution
[version 1; peer review: awaiting peer review]
Alejandro Manzano-Marín, Clemens Grosser, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Torsten H. Struck, Rebekah A. Oomen, Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory Team, Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Wellcome Sanger Institute Tree of Life Core Informatics Team, Caroline Howard, Kerstin Howe, Mark Blaxter, Shane McCarthy, Jonathan M.D. Wood, Fergal Martin, Leanne Haggerty, Chiara Bortoluzzi
Peer Reviewers Invited
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
  • Austrian Science Fund (FWF)
PUBLISHED 06 Oct 2026
https://doi.org/10.12688/openreseurope.23076.1
Data Note metrics AWAITING PEER REVIEW
ERGA-BGE Reference Genome: Corema album ((L.) D. Don, 1830) - the Portuguese crowberry, endemic to the Iberian Peninsula.
[version 1; peer review: awaiting peer review]
João Pedro Marques, Bruno Nevado, Tom Brown, Alessio Iannucci, Alice Mouton, Ann M Mc Cartney, Carla Alegria, Chiara Bortoluzzi, Chiara Natali, Christian de Guttry, Claudio Ciofi, Cristina Máguas, Diego De Panis, Giulio Formenti, Joana Jesus, João Jacinto, José Melo-Ferreira, Joseph Kirangwa, Judit Salces-Ortiz, M. Judite Alves, Marco Morselli, Maria Angela Diroma, Philipp H. Schiffer, Robert M. Waterhouse, Rosa Fernández, Sara Vicente, Sergio Chozas, Vitor C. Sousa, Helena Trindade, Manuela Sim-Sim
Peer Reviewers Invited
  • Funder
  • Horizon Europe Framework Programme
PUBLISHED 22 Sep 2026
https://doi.org/10.12688/openreseurope.24602.1
Data Note metrics
ERGA-BGE reference genome: Homalothecium mandonii - IUCN vulnerable Bryophyte species endemic to Macaronesia
[version 1; peer review: 1 approved]
Manuela Sim-Sim, Anabela Martins, Susana Fontinha, Carlos Lobo, Genoscope Sequencing Technical Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Simone Duprat, Lola Demirdjian, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Chiara Bortoluzzi
Peer Reviewers Hengchi Chen
  • Funders
  • wiss State Secretariat for Education, Research and Innovation (SERI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • France Génomique
  • Horizon Europe Framework Programme
  • ATLASea / SEQ-Sea
  • The Foundation for Science and Technology (FCT)
PUBLISHED 10 Sep 2026
https://doi.org/10.12688/openreseurope.23457.3
Data Note metrics
Revised
ERGA-BGE chromosome-level genome assembly of the giant stream lacewing Osmylus fulvicephalus (Scopoli, 1763)
[version 3; peer review: 3 approved, 2 approved with reservations]
Marius F. Maurstad, Dominik Kusy, Eivind A. B. Undheim, Kjetill S. Jakobsen, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Torsten H. Struck, Rebekah A. Oomen, Ignas Bunikis, Christian Tellgren-Roth, Julia Heintz, Susana Häggqvist, Linnea Jonsäll, Nina Lager, Tuuli Larva, Mai-Britt Mosbech, Martin Pippel, Olga Vinnere Pettersson, Chiara Bortoluzzi
Peer Reviewers Sivasankaran Kuppusamy; Peng-Fei Ma; Fedor Čiampor; Ian Carr; Annabel Whibley
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • European Research Council
  • Horizon Europe Framework Programme
  • H2020 Marie Skłodowska-Curie Actions
LATEST VERSION PUBLISHED 09 Sep 2026
https://doi.org/10.12688/openreseurope.24584.1
Data Note metrics
ERGA-BGE reference genome: Orthotrichum diaphanum – a globally widespread epiphytic moss common in Europe
[version 1; peer review: 1 approved]
Pablo Aguado-Ramsay, Francisco Lara, Christian de Guttry, Chiara Bortoluzzi, Maria Conejero, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Torsten Hugo Struck, Rebekah A Oomen, Genomescope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Emilie Téodori, Caroline Belser, Patrick Wincker, Pedro H Oliveira, Jean-Marc Aury, Isabel Draper
Peer Reviewers Matthew W. Davis
  • Funders
  • Spanish State Research Agency
  • Genoscope, the Commissariat à l'Énergie Atomique et aux Énergies Alternatives (CEA), France Génomique
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • UK Research and Innovation (UKRI) under the Department for Business, Energy and Industrial Strategy’s Horizon Europe Guarantee Scheme
  • Autonomous Community of Madrid
  • Horizon Europe Framework Programme
  • Exploratory research programme ATLASea: Atlas of marine genomes and its targeted project SEQ-Sea
PUBLISHED 29 Jul 2026
https://doi.org/10.12688/openreseurope.21514.2
Data Note metrics
Revised
ERGA-BGE reference genome of Eunicella cavolini, an IUCN Near Threatened Gorgonian of the Mediterranean Sea
[version 2; peer review: 2 approved]
Didier Aurelle, Dorian Guillemain, Frédéric Zuberer, Denys Malengros, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Torsten H. Struck, Rebekah A. Oomen, Genomescope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Caroline Belser, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Fergal Martin, Anne Lazar, Leanne Haggerty, Chiara Bortoluzzi
Peer Reviewers Benjamin D. Young; Alan Elena
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Agence Nationale de la Recherche
  • Horizon Europe Framework Programme
  • Excellence Initiative of Aix-Marseille University
  • European FEDER Fund
LATEST VERSION PUBLISHED 27 Jul 2026
https://doi.org/10.12688/openreseurope.23370.2
Data Note metrics
Revised
ERGA-BGE reference genome of the Eurasian Woodcock (Scolopax rusticola), a game bird species with isolated populations of conservation interest
[version 2; peer review: 2 approved]
Joan Ferrer Obiol, Diego Rubolini, Josephine R. Paris, Francesco Giannelli, David Gonçalves, Pedro Andrade, Beneharo Rodríguez, Alessandro Tedeschi, Michele Sorrenti, Chiara Natali, Marcella Sozzoni, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Torsten H. Struck, Rebekah A. Oomen, Maria Angela Diroma, Claudio Ciofi, Caroline Howard, Mark Blaxter, Wellcome Sanger Institute Tree of Life Management: Samples and Laboratory Team, Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Chiara Bortoluzzi
Peer Reviewers Sifiso M Lukhele; Leilton Willians Luna
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Italian Ministry for University and Research
  • Horizon Europe Framework Programme
LATEST VERSION PUBLISHED 20 Jul 2026
https://doi.org/10.12688/openreseurope.23911.1
Data Note metrics AWAITING PEER REVIEW
ERGA-BGE reference genome of the European hamster (Cricetus cricetus), an IUCN critically endangered species of the Eurasian steppe
[version 1; peer review: awaiting peer review]
Virág Tünde Nyíri, Gábor Sramkó, Tamás Cserkész, Lajos Szatmári, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Rebekah A. Oomen, Torsten H. Struck, José Melo-Ferreira, João Pimenta, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Fergal Martin, Swati Sinha, Leanne Haggerty, Chiara Bortoluzzi
Peer Reviewers Invited
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Hungarian Government
  • Horizon Europe Framework Programme
  • National Research, Innovation and Development Office of Hungary
  • European Union's LIFE Program
PUBLISHED 09 Jun 2026
https://doi.org/10.12688/openreseurope.23936.1
Data Note metrics
ERGA-BGE reference genome of the Mediterranean monk seal (Monachus monachus), an IUCN Vulnerable species
[version 1; peer review: 2 approved]
Tereza Manousaki, Panagiotis Dendrinos, Katerina Vasileiadou, Xenia Sarropoulou, Costas S. Tsigenopoulos, Thanos Dailianis, Eleni Tounta, Nikitas Vogiatzis, Anastasia Komnenou, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Ignas Bunikis, Christian Tellgren-Roth, Mai-Britt Mosbech, Guilherme B. Dias, Olga Vinnere Pettersson, Chiara Bortoluzzi
Peer Reviewers Luis A Escobedo-Morales; Anna Brüniche-Olsen
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
PUBLISHED 09 Jun 2026
https://doi.org/10.12688/openreseurope.22693.2
Data Note metrics
Revised
ERGA-BGE reference genome of Gambusia holbrooki, a globally invasive freshwater fish
[version 2; peer review: 2 approved]
Bonnie Fraser, Clelia Gasparini, Francesco Santi, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Rebekah A. Oomen, Torsten H. Struck, Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory Team, Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Wellcome Sanger Institute Tree of Life Core Informatics Team, Amy Denton, Caroline Howard, Kerstin Howe, Mark Blaxter, Shane McCarthy, Jonathan M.D. Wood, Fergal Martin, Swati Sinha, Leanne Haggerty, Chiara Bortoluzzi
Peer Reviewers Alejandro S. Mechaly; Roger Huerlimann
  • Funders
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
LATEST VERSION PUBLISHED 04 Jun 2026
https://doi.org/10.12688/openreseurope.20840.2
Data Note metrics
Revised
ERGA-BGE genome of Dailognatha quadricollis, an East Mediterranean darkling beetle
[version 2; peer review: 2 approved]
Giannis Bolanakis, Danae Karakasi, Eleftherios Bitzilekis, Manos Stratakis, Apostolos Trichas, Petros Lymberakis, Nikos Poulakakis, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Genomescope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Emilie Téodori, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Chiara Bortoluzzi
Peer Reviewers Arun Arumugaperumal; Yingao Cai and Fengling Huang
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Agence Nationale de la Recherche
  • Horizon Europe Framework Programme
LATEST VERSION PUBLISHED 29 May 2026
https://doi.org/10.12688/openreseurope.22692.2
Data Note metrics
Revised
ERGA-BGE reference genome of Xylophaga dorsalis - a common deep-sea wood-boring bivalve with Atlantic-Mediterranean distribution
[version 2; peer review: 1 approved, 3 approved with reservations]
Sergi Taboada, Carlota Gracia-Sancha, Carles Galià-Camps, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Rebekah A. Oomen, Torsten H. Struck, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Fergal Martin, Anna Lazar, Leanne Haggerty, Chiara Bortoluzzi
Peer Reviewers Abdelmalek Lekired; Fabrizio Marcondes Machado; Melody S Clark; Fabrizio Ghiselli
  • Funders
  • UK Research and Innovation (UKRI)
  • European Union «NextGenerationEU»/PRTR»
  • Horizon Europe Framework Programme
  • Swiss State Secretariat for Education, Research and Innovation (SERI
  • Spanish Mistry of Science and Innovation (MCIN)
LATEST VERSION PUBLISHED 11 May 2026
https://doi.org/10.12688/openreseurope.20937.3
Data Note metrics
Revised
ERGA-BGE reference genome of the forest-restricted Cretan subspecies of Hanak's bat (Pipistrellus hanaki creticus), an IUCN Vulnerable species
[version 3; peer review: 2 approved]
Panagiotis Georgakakis, Danae Karakasi, Petros Lymberakis, Manolis Papadimitrakis, Manos Stratakis, Eleftherios Bitzilekis, Nikolaos Poulakakis, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Genomescope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Sophie Mangenot, Caroline Belser, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Leanne Haggerty, Swati Sinha, Fergal Martin, Chiara Bortoluzzi
Peer Reviewers Richard Orton; Jiang Feng
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Agence Nationale de la Recherche
  • Horizon Europe Framework Programme
LATEST VERSION PUBLISHED 11 Apr 2026
https://doi.org/10.12688/openreseurope.21670.2
Data Note metrics
Revised
ERGA-BGE reference genome of Lewinskya acuminata, a common epiphytic Mediterranean moss with disjunct populations in California and Ethiopia
[version 2; peer review: 2 approved, 1 approved with reservations]
Pablo Aguado-Ramsay, Francisco Lara, Isabel Draper, Maria Conejero, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Torsten H. Struck, Rebekah A. Oomen, Genomescope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Emilie Téodori, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Chiara Bortoluzzi
Peer Reviewers Qilin Yang; Panagiotis Ioannidis; Annabel Whibley
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Autonomous Community of Madrid
  • Horizon Europe Framework Programme
  • Spanish Research Agency of the Ministry of Science and Innovation
  • Agence nationale de la recherche (ANR)
LATEST VERSION PUBLISHED 30 Mar 2026
https://doi.org/10.12688/openreseurope.21990.1
Data Note metrics
ERGA-BGE genome of Leiobunum subalpinum - a montane-subalpine harvestman species endemic to the eastern Alps
[version 1; peer review: 2 approved]
Peter Kozel, Aja Bončina, Elena Bužan, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Fergal Martin, Vianey Paola Barrera Enriquez, Leanne Haggerty, Chiara Bortoluzzi
Peer Reviewers Nikolaos Papadopoulos; Craig Wilding
  • Funders
  • UK Research and Innovation (UKRI)
  • Karst Research Programme
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
PUBLISHED 26 Mar 2026
https://doi.org/10.12688/openreseurope.23162.1
Data Note metrics
ERGA-BGE reference genome of Phorcus turbinatus - a water quality biomarker and species distributed along the Mediterranean coast
[version 1; peer review: 4 approved with reservations]
Judit Salces-Ortiz, Klara Eleftheriadi, Fernando Ángel Fernandez-Álvarez, Rosa Fernández, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Torsten H. Struck, Rebekah A. Oomen, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Fergal Martin, Anna Lazar, Leanne Haggerty, Chiara Bortoluzzi
Peer Reviewers André Gomes-dos-Santos; Xiao-Chen Huang; Marco Gerdol; Masa-Aki Yoshida
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • European Social Fund Plus
  • Ministerio de Ciencia, Innovación y Universidades
  • Horizon Europe Framework Programme
PUBLISHED 25 Mar 2026
1-20 of 39 ARTICLES
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