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Genome Reports from the Biodiversity Genomics Europe Project

Genome Reports from the Biodiversity Genomics Europe Project

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Home Collections Genome Reports from the Biodiversity Genomics Europe Project
1-20 of 31 ARTICLES
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 in 
https://doi.org/10.12688/openreseurope.23911.1
Data Note metrics AWAITING PEER REVIEW
ERGA-BGE reference genome of the European hamster (Cricetus cricetus), an IUCN critically endangered species of the Eurasian steppe
[version 1; peer review: awaiting peer review]
Virág Tünde Nyíri, Gábor Sramkó, Tamás Cserkész, Lajos Szatmári, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Rebekah A. Oomen, Torsten H. Struck, José Melo-Ferreira, João Pimenta, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Fergal Martin, Swati Sinha, Leanne Haggerty, Chiara Bortoluzzi
Peer Reviewers Invited
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Hungarian Government
  • Horizon Europe Framework Programme
  • National Research, Innovation and Development Office of Hungary
  • European Union's LIFE Program
PUBLISHED 09 Jun 2026
https://doi.org/10.12688/openreseurope.23936.1
Data Note metrics AWAITING PEER REVIEW
ERGA-BGE reference genome of the Mediterranean monk seal (Monachus monachus), an IUCN Vulnerable species
[version 1; peer review: awaiting peer review]
Tereza Manousaki, Panagiotis Dendrinos, Katerina Vasileiadou, Xenia Sarropoulou, Costas S. Tsigenopoulos, Thanos Dailianis, Eleni Tounta, Nikitas Vogiatzis, Anastasia Komnenou, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Ignas Bunikis, Christian Tellgren-Roth, Mai-Britt Mosbech, Guilherme B. Dias, Olga Vinnere Pettersson, Chiara Bortoluzzi
Peer Reviewers Invited
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
PUBLISHED 09 Jun 2026
https://doi.org/10.12688/openreseurope.22693.2
Data Note metrics
Revised
ERGA-BGE reference genome of Gambusia holbrooki, a globally invasive freshwater fish
[version 2; peer review: 1 approved, 1 approved with reservations]
Bonnie Fraser, Clelia Gasparini, Francesco Santi, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Rebekah A. Oomen, Torsten H. Struck, Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory Team, Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Wellcome Sanger Institute Tree of Life Core Informatics Team, Amy Denton, Caroline Howard, Kerstin Howe, Mark Blaxter, Shane McCarthy, Jonathan M.D. Wood, Fergal Martin, Swati Sinha, Leanne Haggerty, Chiara Bortoluzzi
Peer Reviewers Alejandro S. Mechaly; Roger Huerlimann
  • Funders
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
LATEST VERSION PUBLISHED 04 Jun 2026
https://doi.org/10.12688/openreseurope.20840.2
Data Note metrics
Revised
ERGA-BGE genome of Dailognatha quadricollis, an East Mediterranean darkling beetle
[version 2; peer review: 2 approved]
Giannis Bolanakis, Danae Karakasi, Eleftherios Bitzilekis, Manos Stratakis, Apostolos Trichas, Petros Lymberakis, Nikos Poulakakis, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Emilie Téodori, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Chiara Bortoluzzi
Peer Reviewers Arun Arumugaperumal; Yingao Cai and Fengling Huang
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Agence Nationale de la Recherche
  • Horizon Europe Framework Programme
LATEST VERSION PUBLISHED 29 May 2026
https://doi.org/10.12688/openreseurope.22692.2
Data Note metrics
Revised
ERGA-BGE reference genome of Xylophaga dorsalis - a common deep-sea wood-boring bivalve with Atlantic-Mediterranean distribution
[version 2; peer review: 1 approved, 3 approved with reservations]
Sergi Taboada, Carlota Gracia-Sancha, Carles Galià-Camps, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Rebekah A. Oomen, Torsten H. Struck, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Fergal Martin, Anna Lazar, Leanne Haggerty, Chiara Bortoluzzi
Peer Reviewers Abdelmalek Lekired; Fabrizio Marcondes Machado; Melody S Clark; Fabrizio Ghiselli
  • Funders
  • UK Research and Innovation (UKRI)
  • European Union «NextGenerationEU»/PRTR»
  • Horizon Europe Framework Programme
  • Swiss State Secretariat for Education, Research and Innovation (SERI
  • Spanish Mistry of Science and Innovation (MCIN)
LATEST VERSION PUBLISHED 11 May 2026
https://doi.org/10.12688/openreseurope.23457.1
Data Note metrics
ERGA-BGE reference genome of Osmylus fulvicephalus, the giant stream lacewing, Europe's representative of the family Osmylidae
[version 1; peer review: 1 approved with reservations]
Marius F. Maurstad, Dominik Kusy, Eivind A. B. Undheim, Kjetill S. Jakobsen, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Torsten H. Struck, Rebekah A. Oomen, Ignas Bunikis, Christian Tellgren-Roth, Julia Heintz, Susana Häggqvist, Linnea Jonsäll, Nina Lager, Tuuli Larva, Mai-Britt Mosbech, Martin Pippel, Olga Vinnere Pettersson, Chiara Bortoluzzi
Peer Reviewers Sivasankaran Kuppusamy
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • European Research Council
  • Horizon Europe Framework Programme
  • H2020 Marie Skłodowska-Curie Actions
PUBLISHED 28 Apr 2026
https://doi.org/10.12688/openreseurope.23370.1
Data Note metrics AWAITING PEER REVIEW
ERGA-BGE reference genome of the Eurasian Woodcock (Scolopax rusticola), a game bird species with isolated populations of conservation interest
[version 1; peer review: awaiting peer review]
Joan Ferrer Obiol, Diego Rubolini, Josephine R. Paris, Francesco Giannelli, David Gonçalves, Pedro Andrade, Beneharo Rodríguez, Alessandro Tedeschi, Michele Sorrenti, Chiara Natali, Marcella Sozzoni, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Torsten H. Struck, Rebekah A. Oomen, Maria Angela Diroma, Claudio Ciofi, Caroline Howard, Mark Blaxter, Wellcome Sanger Institute Tree of Life Management: Samples and Laboratory Team, Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Chiara Bortoluzzi
Peer Reviewers Invited
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Italian Ministry for University and Research
  • Horizon Europe Framework Programme
PUBLISHED 13 Apr 2026
https://doi.org/10.12688/openreseurope.20937.3
Data Note metrics
Revised
ERGA-BGE reference genome of the forest-restricted Cretan subspecies of Hanak's bat (Pipistrellus hanaki creticus), an IUCN Vulnerable species
[version 3; peer review: 2 approved]
Panagiotis Georgakakis, Danae Karakasi, Petros Lymberakis, Manolis Papadimitrakis, Manos Stratakis, Eleftherios Bitzilekis, Nikolaos Poulakakis, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Sophie Mangenot, Caroline Belser, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Leanne Haggerty, Swati Sinha, Fergal Martin, Chiara Bortoluzzi
Peer Reviewers Richard Orton; Jiang Feng
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Agence Nationale de la Recherche
  • Horizon Europe Framework Programme
LATEST VERSION PUBLISHED 11 Apr 2026
https://doi.org/10.12688/openreseurope.21670.2
Data Note metrics
Revised
ERGA-BGE reference genome of Lewinskya acuminata, a common epiphytic Mediterranean moss with disjunct populations in California and Ethiopia
[version 2; peer review: 2 approved, 1 approved with reservations]
Pablo Aguado-Ramsay, Francisco Lara, Isabel Draper, Maria Conejero, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Torsten H. Struck, Rebekah A. Oomen, Genomescope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Emilie Téodori, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Chiara Bortoluzzi
Peer Reviewers Qilin Yang; Panagiotis Ioannidis; Annabel Whibley
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Autonomous Community of Madrid
  • Horizon Europe Framework Programme
  • Spanish Research Agency of the Ministry of Science and Innovation
  • Agence nationale de la recherche (ANR)
LATEST VERSION PUBLISHED 30 Mar 2026
https://doi.org/10.12688/openreseurope.21990.1
Data Note metrics AWAITING PEER REVIEW
ERGA-BGE genome of Leiobunum subalpinum - a montane-subalpine harvestman species endemic to the eastern Alps
[version 1; peer review: awaiting peer review]
Peter Kozel, Aja Bončina, Elena Bužan, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Fergal Martin, Vianey Paola Barrera Enriquez, Leanne Haggerty, Chiara Bortoluzzi
Peer Reviewers Invited
  • Funders
  • UK Research and Innovation (UKRI)
  • Karst Research Programme
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
PUBLISHED 26 Mar 2026
https://doi.org/10.12688/openreseurope.23162.1
Data Note metrics AWAITING PEER REVIEW
ERGA-BGE reference genome of Phorcus turbinatus - a water quality biomarker and species distributed along the Mediterranean coast
[version 1; peer review: awaiting peer review]
Judit Salces-Ortiz, Klara Eleftheriadi, Fernando Ángel Fernandez-Álvarez, Rosa Fernández, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Torsten H. Struck, Rebekah A. Oomen, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Fergal Martin, Anna Lazar, Leanne Haggerty, Chiara Bortoluzzi
Peer Reviewers Invited
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • European Social Fund Plus
  • Ministerio de Ciencia, Innovación y Universidades
  • Horizon Europe Framework Programme
PUBLISHED 25 Mar 2026
https://doi.org/10.12688/openreseurope.20681.1
Data Note metrics
ERGA-BGE reference genome of Diadema setosum: the Black Longspine Urchin invading the Mediterranean sea
[version 1; peer review: 2 approved with reservations]
Katerina Vasileiadou, Tereza Manousaki, Astrid Böhne, Rosa Fernández, Nuria Escudero, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Benjamin Istace, Arnaud Couloux, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Rita Monteiro
Peer Reviewers Abdelmalek Lekired; Bingpeng Xing
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
  • Wellcome Trust
PUBLISHED 12 Mar 2026
https://doi.org/10.12688/openreseurope.20666.3
Data Note metrics
Revised
ERGA-BGE reference genome of the Azores Bullfinch - Pyrrhula murina Godman, 1866: an IUCN Vulnerable Species endemic to a single island in the Azores Archipelago (Portugal)
[version 3; peer review: 2 approved, 1 approved with reservations]
Ricardo Jorge Lopes, Astrid Böhne, Thomas Marcussen, Rebekah A. Oomen, Torsten Hugo Struck, Laura Aguilera, Marta Gut, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Rita Monteiro
Peer Reviewers Luke W Silver; Annabel Whibley; Madeline Chase
  • Funders
  • UID/00329/2025 | FCT Fundação para a Ciência e Tecnologia - Centre for Ecology, Evolution and Environmental Changes (CE3C)
  • Horizon Europe Framework Programme
  • UK Research and Innovation
  • 22.00173, 24.00054 | Swiss State Secretariat for Education, Research and Innovation (SERI)
LATEST VERSION PUBLISHED 11 Mar 2026
https://doi.org/10.12688/openreseurope.21608.2
Data Note metrics
Revised
ERGA-BGE Chromosome-Level Genome of Patella rustica Linnaeus, 1758: a Resource to Investigate Responses to Global Warming in the intertidal
[version 2; peer review: 2 approved, 1 approved with reservations]
Rui Faria, Rocío Nieto Vilela, Fernando P Lima, Rita Monteiro, Astrid Böhne, Thomas Marcussen, Torsten H Struck, Rebekah A Oomen, Marta Gut, Laura Aguilera, Tyler Alioto, Francisco Câmara Ferreira, Jèssica Gómez-Garrido, Fernando Cruz, Anna Lazar, Leanne Haggerty, Fergal Martin, Tom Brown
Peer Reviewers Jacob A Tennessen; Yasuto ISHII; Craig Wilding
  • Funders
  • Fundação para a Ciência e a Tecnologia
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
  • UK Research and Innovation
LATEST VERSION PUBLISHED 09 Mar 2026
https://doi.org/10.12688/openreseurope.21672.2
Data Note metrics
Revised
ERGA-BGE reference genome of Hirudo verbana, a once neglected freshwater haematophagous European medicinal leech
[version 2; peer review: 2 approved]
Alejandro Manzano-Marín, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Torsten H. Struck, Rebekah A. Oomen, Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory Team, Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Wellcome Sanger Institute Tree of Life Core Informatics Team, Caroline Howard, Kerstin Howe, Mark Blaxter, Shane McCarthy, Jonathan M.D. Wood, Fergal Martin, Anna Lazar, Leanne Haggerty, Chiara Bortoluzzi
Peer Reviewers Naim Saglam; Christian Mueller
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
  • 840270
LATEST VERSION PUBLISHED 10 Feb 2026
https://doi.org/10.12688/openreseurope.21671.2
Data Note metrics
Revised
ERGA-BGE reference genome of Leviellus thorelli, a common orb-weaving spider representing the Zygiellidae family
[version 2; peer review: 2 approved]
Matjaz Gregorič, Elena Bužan, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Chiara Bortoluzzi
Peer Reviewers Zhisheng Zhang; Guilherme Gainett
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
  • Slovenian Research and Innovation Agency
LATEST VERSION PUBLISHED 10 Feb 2026
https://doi.org/10.12688/openreseurope.22092.1
Data Note metrics
ERGA-BGE reference genome of Carlina diae, an endemic spineless thistle of Crete, Greece
[version 1; peer review: 3 approved with reservations]
Eleftheria Antaloudaki, Danae Karakasi, Manos Stratakis, Eleftherios Bitzilekis, Petros Lymberakis, Nikolaos Poulakakis, Tereza Manousaki, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Fergal Martin, Vianey Paola Barrera Enriquez, Leanne Haggerty, Chiara Bortoluzzi
Peer Reviewers Nunzio D'Agostino; Francesco Garassino; Cassandra Elphinstone
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
  • Agence nationale de la recherche
PUBLISHED 03 Feb 2026
https://doi.org/10.12688/openreseurope.20841.3
Data Note metrics
Revised
ERGA-BGE reference genome of Holothuria (Platyperona) sanctori: a sea cucumber from the Mediterranean Sea
[version 3; peer review: 2 approved]
Katerina Vasileiadou, Thanos Dailianis, Grigorios Skouradakis, Emmanouela Vernadou, Danae Karakasi, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Tereza Manousaki, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Adama Ndar, Patrick Wincker, Pedro H Oliveira, Jean-Marc Aury, Chiara Bortoluzzi
Peer Reviewers Poppy Hesketh-Best; Estelle Proux-Wéra
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
  • Agence nationale de la recherche
LATEST VERSION PUBLISHED 03 Feb 2026
https://doi.org/10.12688/openreseurope.22136.1
Data Note metrics
ERGA-BGE Genome of Ailoscolex lacteospumosus Bouché, 1969 – the enigmatic milky worm endemic to the Pyrenees
[version 1; peer review: 1 approved, 2 approved with reservations]
Marta Novo, Daniel Fernández Marchán, Sylvain Gérard, Alejandro Martínez Navarro, Rita Monteiro, Astrid Böhne, Thomas Marcussen, Torsten H Struck, Rebekah A Oomen, Laura Aguilera, Marta Gut, Francisco Câmara Ferreira, Jèssica Gómez-Garrido, Fernando Cruz, Tyler Alioto, Anna Lazar, Leanne Haggerty, Fergal Martin, Tom Brown
Peer Reviewers Arun Arumugaperumal; Huifeng Zhao and Yiming Zhang; Jennifer McIntyre
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
  • MCIN/AEI/10.13039/501100011033/FEDER, UE
PUBLISHED 26 Jan 2026
https://doi.org/10.12688/openreseurope.22093.1
Data Note metrics
ERGA-BGE genome of Albinaria teres (Olivier, 1801): a rock-dwelling land snail endemic to the island of Crete, Greece
[version 1; peer review: 2 approved with reservations]
Danae Karakasi, Katerina Vardinoyannis, Giannis Bolanakis, Eleftherios Bitzilekis, Manos Stratakis, Petros Lymberakis, Nikolaos Poulakakis, Rita Monteiro, Astrid Böhne, Rosa Fernández, Nuria Escudero, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Adama N’dar, Francesca Floriana Tricomi, Leanne Haggerty, Fergal Martin, Patrick Wincker, Pedro H Oliveira, Jean-Marc Aury, Tom Brown
Peer Reviewers Maurine Neiman and Srivarshini Saravanakumar; Yasuto ISHII
  • Funders
  • UK Research and Innovation (UKRI)
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Horizon Europe Framework Programme
  • Genoscope, the Commissariat à l'Energie Atomique et aux Énergies Alternatives (CEA), France Génomique
  • ATLASea: Atlas of marine genomes
PUBLISHED 26 Jan 2026
1-20 of 31 ARTICLES
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