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https://doi.org/10.12688/openreseurope.20059.1
Software Tool Article
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Marianna Ventouratou ,
Liane Hughes ,
Katarina Öjefors Stark ,
Johan Rung ,
Natalia Koralewska ,
Marzena Ciechomska ,
Krzysztof Kurowski ,
Cezary Mazurek ,
Eva Alloza ,
Alberto Hornos-Vidal ,
Salvador Capella-Gutierrez ,
Robin Navest ,
Erik Hjerde ,
Aitana Neves ,
Colman O'Cathail ,
Alfonso Valencia ,
Henning Hermjakob ,
Matt Pearce ,
Manish Kumar ,
Nadim Rahman ,
Carla Cummins ,
Guy Cochrane
Peer Reviewers
Gopi Battineni;
Flavia Bernardini;
Muskan kapoor;
David Horsfall
Funders
Horizon 2020 Framework Programme
Horizon Europe Framework Programme
PUBLISHED 23 Jul 2025
https://doi.org/10.12688/openreseurope.20839.1
Review
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Comparison of explainability methods for hallucination analysis in LLMs
[version 1; peer review: 1 approved with reservations, 2 not approved]
Ioannis Papagiannopoulos ,
Hercules Koutalidis ,
Panagiota Rempi ,
Christos Ntanos ,
Dimitrios Askounis
Peer Reviewers
Florian Leiser;
Albert Sánchez Graells;
Burak Yaprak
Funder
Horizon Europe Framework Programme
PUBLISHED 23 Jul 2025
https://doi.org/10.12688/openreseurope.20499.1
Data Note
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Bernhard Hausdorf ,
Elicio Tapia ,
Rita Monteiro ,
Astrid Böhne ,
Thomas Marcussen ,
Torsten H. Struck ,
Rebekah A Oomen ,
Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory team ,
Wellcome Sanger Institute Scientific Operations: Sequencing Operations ,
Wellcome Sanger Institute Tree of Life Core Informatics team ,
Leanne Haggerty ,
Fergal Martin ,
Thomas Brown
Peer Reviewers
Takumi Saito;
Maurine Neiman
Funders
UK Research and Innovation (UKRI)
Swiss State Secretariat for Education, Research and Innovation (SERI)
Horizon Europe Framework Programme
Wellcome Trust
PUBLISHED 23 Jul 2025
https://doi.org/10.12688/openreseurope.20783.1
Research Article
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Lada Čale Feldman
Peer Reviewers
Renata Jambrešić Kirin;
Miranda Levanat Peričić
Funder
Horizon Europe Framework Programme
PUBLISHED 23 Jul 2025
https://doi.org/10.12688/openreseurope.20513.1
Research Article
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Andreas Bertsatos ,
Despoina E Flouri ,
Antonios Papadomanolakis ,
Elena F Kranioti ,
María Inmaculada Alemán Aguilera ,
Efstratios D Valakos ,
Efthymia Nikita
Peer Reviewers
Jyothi Thomas;
Siam Knecht
Funder
Horizon Europe Framework Programme
PUBLISHED 21 Jul 2025
https://doi.org/10.12688/openreseurope.20298.1
Method Article
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Vijay Palliyil ,
Niklas Suhre ,
Meng Cai ,
Hiba Karam ,
Lalita Phatthanachaisuksiri ,
Holly Madill ,
Saya Noor ,
Eva Kaßens-Noor
Peer Reviewers
Diego Vergara
Funders
Horizon Europe Framework Programme
H2020 European Research Council
PUBLISHED 21 Jul 2025
https://doi.org/10.12688/openreseurope.19099.2
Research Article
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James Ciarlo` ,
Ryan Vella ,
Martin Saliba ,
Raymond Ellul ,
Alfred Micallef ,
Erika Coppola ,
Aaron Micallef ,
David Mifsud
Peer Reviewers
Sultan Hameed;
Paolo Cristofanelli;
Pavlos Kalabokas and John Kapsomenakis;
Giandomenico Pace and Virginia Ciardini
Funders
Horizon Europe Framework Programme
European Regional Development Fund
LATEST VERSION PUBLISHED 15 Jul 2025
https://doi.org/10.12688/openreseurope.20628.1
Open Letter
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When artificial intelligence meets protein research
[version 1; peer review: 2 approved, 1 approved with reservations]
Sonia Longhi ,
Salvador Ventura ,
Sandra Macedo-Ribeiro ,
Leandro G. Radusky ,
Jovana Kovačević ,
R. Gonzalo Parra ,
Miguel A. Andrade-Navarro ,
Andrey V. Kajava ,
Zuzana Bednáriková ,
Alexander Monzon ,
Rita Vilaça
Peer Reviewers
Nicola Bordin;
Judith Bernett and Konstantin Pelz;
Marcelo C. R. Melo
Funder
European Cooperation in Science and Technology
PUBLISHED 15 Jul 2025
https://doi.org/10.12688/openreseurope.19229.1
Study Protocol
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Olivier Galy ,
Anne-Laure Dotte ,
Vaimoe Albanese ,
Amelle Aoudia ,
Jane Awi ,
Séverine Bouard ,
Ben Boulekouran ,
Jonas Brouillon ,
Christian Bugajim ,
Marineth Magi Dereveke ,
Jean Marie Fotsing ,
Patterson Giza ,
Lindon Havimana ,
Shirlene Hiru ,
George Horoasia ,
Juliane Kaoh ,
Serema Kwato’o ,
Floriane Lawac ,
jean François Loisel ,
Alexander Makini ,
Yane Meltetineath ,
Pierre Metsan ,
Pascal Michon ,
Patrick Miniti ,
Adeline Mweleul ,
Ariane Nialupis ,
Alois Ndrewou ,
Felicity Nilwo Rogers ,
Lovelyn Otoiasi ,
Nixon Panda ,
Arno Pascht ,
Matthew Pok ,
Jasmine Tora’aeke Rahi’i ,
Emily Nosepaqo Rohoana ,
Grace Rohoana ,
Patrick Rory ,
Catherine Sabinot ,
Danny Saka ,
Christophe Serra-Mallol ,
Miriam Arzienta Sulu ,
Annette Theophile ,
Frank Thomas ,
Isaake Tuikalepa ,
Layda Viva ,
Waixen Waikata ,
Akila Nedjar Guerre ,
Louis Lagarde
Peer Reviewers
Robby Zidny;
Karabo Justice Chuene
Funders
Horizon 2020 Framework Programme
Pacific Island Universities Regional Network Grant (PIURN)
PUBLISHED 14 Jul 2025
https://doi.org/10.12688/openreseurope.20108.2
Research Article
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Laura María Zanón Bayón-Torres ,
Almudena Juárez Rodriguez ,
Mercedes Fernández
Peer Reviewers
M. Alvi Syahrin;
Joseph Nwadiuko;
Virginia Paloma;
Francesca Esposito
Funder
Horizon 2020 Framework Programme
LATEST VERSION PUBLISHED 14 Jul 2025
https://doi.org/10.12688/openreseurope.19075.2
Research Article
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Hande Demirel ,
Ayşenur Koçyiğit ,
Ben Alpagut ,
Damla Muhcu
Peer Reviewers
Gokhan Sahin;
Rovick Tarife;
Mert Kompil;
Sassi Rekik
Funders
European Union, JPI Urban Europe PED programme
Horizon 2020 Framework Programme
Türkiye Bilimsel ve Teknolojik Araştırma Kurumu
LATEST VERSION PUBLISHED 14 Jul 2025
https://doi.org/10.12688/openreseurope.18640.2
Research Article
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Revised
Prospective versus retrospective: a simple matter of timing?
[version 2; peer review: 1 approved, 1 approved with reservations]
Mohammad Kamran Ikram ,
Jeremy A Labrecque ,
Mohammad Arfan Ikram
Peer Reviewers
Sophie Bots;
Annie Y Ng
Funder
Horizon 2020 Framework Programme
LATEST VERSION PUBLISHED 10 Jul 2025
https://doi.org/10.12688/openreseurope.20612.1
Research Article
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Juan José Riquelme ,
Rafael Luque Merino ,
Andrés Castellanos-Gómez
Peer Reviewers
Edgar Mosquera-Vargas;
Ehsan Elahi
Funder
Horizon 2020 Framework Programme
PUBLISHED 08 Jul 2025
https://doi.org/10.12688/openreseurope.20202.1
Case Study
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AWAITING PEER REVIEW
Natasha Dimishkovska Krsteski ,
Samet Öztürk ,
Altin Maraj ,
Milan Grozdanovic ,
Luana Tesch ,
Carlos Rebelo
Peer Reviewers
Invited
Funder
HORIZON EUROPE Framework Programme
PUBLISHED 08 Jul 2025
https://doi.org/10.12688/openreseurope.19923.1
Research Article
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Błażej Warkocki
Peer Reviewers
Purwarno Purwarno
Funder
Horizon Europe Framework Programme
PUBLISHED 08 Jul 2025
https://doi.org/10.12688/openreseurope.18538.2
Research Article
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Tuuli Kasso ,
Meaghan Mackie ,
Max Ramsøe ,
Lars Vilhelmsen ,
Carsten Gundlach ,
Sina Baier-Stegmaier ,
Alberto J. Taurozzi ,
Matthew J. Collins
Peer Reviewers
Nelson Enrique Arenas;
Luca Fontanesi;
Simon Hammann;
Richard Bernstein
Funders
Carlsbergfondet
Danmarks Grundforskningsfond
Horizon 2020 Framework Programme
Innovationsfonden
Danish Agency for Science and Higher Education
Novo Nordisk Fonden
LATEST VERSION PUBLISHED 08 Jul 2025
https://doi.org/10.12688/openreseurope.20266.1
Research Article
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Mark J. SIER ,
Bianca R. Spiering ,
Mark J. Dekkers ,
Frits J. Hilgen
Peer Reviewers
Tesfaye Kidane;
Julie Carlut;
Tilo von Dobeneck
Funder
Horizon Europe Framework Programme
PUBLISHED 04 Jul 2025
https://doi.org/10.12688/openreseurope.18594.2
Research Article
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Sergey Semenov ,
Patrick Namy ,
Aditya Kale ,
Sello Tsebe
Peer Reviewers
Neeraj Kumar Bhoi;
Laura Donato;
Shibo Kuang;
Theresa Coetsee
Funder
Horizon 2020 Framework Programme
LATEST VERSION PUBLISHED 04 Jul 2025
https://doi.org/10.12688/openreseurope.20695.1
Method Article
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Carlos Vargas-Silva ,
Arjen Leerkes ,
Denis Kierans ,
Lalaine Siruno ,
Albert Kraler
Peer Reviewers
Thomas Huddleston;
Mochamad Kevin Romadhona;
Natascha Zaun;
Giacomo Solano
Funders
Canada Excellence Research Chairs, Government of Canada
Horizon Europe Framework Programme
UK Research and Innovation
PUBLISHED 04 Jul 2025
https://doi.org/10.12688/openreseurope.18856.2
Case Study
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Giorgio Bonvicini ,
Fabiola Roccatagliata ,
Mario Cortese ,
Kostas Karanasios ,
Panos Kotsampopoulos ,
Fausto Sainz ,
Nora Ganzinelli ,
Alessandra Montanelli ,
Francesca Battistelli ,
Cristina Barbero ,
Emilio Ghiani ,
Sara Ruffini ,
Alessandra Cuneo
Peer Reviewers
Siamak Hosseinzadeh;
Avraam Kartalidis;
GABRIEL WINTER;
Romain Mauger
Funders
LIFE programme
Horizon 2020 Framework Programme
Horizon Europe Framework Programme
European Commission
LATEST VERSION PUBLISHED 04 Jul 2025